Nathan suffers horrible consequences for his heroic doings when all of the heroes are thrown four months into the past. Peter survives the tragic happenings high above New York City, and the Company tags him as a threat, which eventually leads to an ugly confrontation with the Haitian and Elle. D.L. makes the supreme sacrifice for Micah and Niki. Horrifically, Maya’s dark abilities manifest for the first time, further fueling her and Alejandro to America in search of help. An unexpected yet familiar face is introduced.
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Peter and Caitlin get first-hand experience in just how dangerous the virus effecting people with abilities can be, when one of his forgotten powers suddenly shows itself, and they are thrown into a crisis. Bob, Matt, Nathan, Niki, and Suresh must stick together in order to fend off the “boogyman’s” wicked attack. In spite of Claire’s attempts to keep them separate, West discovers that the man who once kidnapped him when he was young is her father. Hiro and Kensei’s legendary journey in feudal Japan takes a final dramatic turn. 
With the horrifying predictions beginning to unfold before their very eyes, the ordinary people with extraordinary powers meet with moments of aches and pains and perils while in Kirby Plaza, with an unflinching sort of heroism, as the first volume of Heroes comes to a close, and the next amazingly begins! 
While perfectly perched to become a member of Congress, and someday more, Nathan must consider the overall cost to those he cherishes. He must also consider the advice his mother gave him, and the prophecy spoken by Linderman. While preparing to battle Sylar to the end, Hiro’s father tells him of his true linage. Whilst many heroes dutifully arrive in NYC, Ted and Peter try to bail before the city meets its foretold fiery end. Matt and H.R.G. discover the shocking truths behind the ‘tracking system’ used to locate people with unique powers.
With newfound knowledge of what’s really on the line if they do not succeed in their mission, Hiro and Ando’s willpower to save the planet is tested. Dedicated to the road he’s on, Nathan takes a few shocking steps to help ensure his election. D.L. and Jessica start to understand just how their family pieces into Linderman’s current plans. Fresh meat is brought into Thompson’s company’s fold. With the blood on his hands mounting, Sylar decides to revisit his mother.
Sylar ‘helps’ Suresh locate more people with unique powers before continuing his rampage. Two heroes will encounter the ever-stronger serial killer. After his talk with Linderman, Nathan must take what he’s learned in the conversation and factor it into very complicated decisions that will not only shape the future for himself, but for his family, NYC, and the entirety of the world. Linderman acquires Jessica for his long-reaching plans, as Thompson uses every resource at his command to find Claire. Hiro’s determination to ‘save the world’ only strengthens when he is faced with the grim reality.
Nathan has a troubling meeting with the mysterious Linderman face-to-face as the election and NYC’s impending doom draw near. Hiro’s effort to pilfer the samurai sword steers him ito a dreary new route. Suresh has a breakthrough on his list, at a very high cost. D.L. starts to wonder if everything is as it seems at home. Isaac creates his most horrific painting. Candice Wilmer, a new hero, makes a deceptive debut.
Whilst Claire uncovers the disreputable truth about her biological father, back at home her adoptive mother struggles in the face of a crisis. Matt is thrust into the crosshairs of a new assassin when he takes a bodyguard job for a twisted attorney. A Damsel in distress distracts Hiro and Ando when they return to Las Vegas in another attempt to locate the sword. Unbeknownst to Suresh, he has put himself in great danger when he tracks down someone on his list. Still trying desperately to help Nathan locate Peter, Simone seeks help in an unlikely place.
Hiro has difficulty making his tycoon father and motivated sister comprehend his heroic new path in life. When a chance to reunite with D.L. and Micah comes her way, Niki finds herself doubting. Claude tries to help Peter learn to control his abilities, but the procedure might destroy Peter’s belief in the ones he holds most dear. Firm in her determination to locate her biological mother, Claire starts her journey to a Texas trailer park. Elsewhere, Sylar makes a bold and surprising move against H.R.G. and his family. 
While Hiro searches for the samurai sword, he is chased by mysterious assailants. His quest for the sword takes an even more odd turn when his dad appears. A newly sobered Isaac devotes himself to preventing NY’s destruction, as well as Peter’s. A budding hero may have a thing or two to learn when an invisible man, complete with weird past, Claude, arrives on the scene. As Matt becomes more open to Janice, his wife, D.L. finds himself at odds with his new responsibilities as a family man. H.R.G. puts all of his attention on his deadly prisoner, Sylar. In the meantime, after finding the Haitian, Claire embarks on a secret exploration for her true biological parents. While trying his best to locate people from ‘the list’, Suresh has a shocking visitor. 
Two weeks following recent events, Nathan is resolves to help a comatose Peter and must turn to Simone for help. After seeing the ever confusing “Hiro vs. T-Rex” painting Isaac created, Hiro and Ando are inspired to find the samurai sword depicted in the painting. Jessica attempts to fight Niki’s resolution to give herself over to the police. With Matt chasing after him, and his partner, Eden, dead, H.R.G. must refocus himself on the instructions concerning Sylar. Following a choice given to her by the Haitian, Claire finds herself at an impasse as she suffers the changes her decision has brought about. Suresh takes up his father’s life’s mission and begins to share info about who made the list of people with unique powers, and the potential threats to their very lives. The latest hero makes a very surprising debut.
Distressing and somber repercussions befall the heroes, their friends, and their families after the catastrophic events in Texas. In the meantime, surprising information about the moments before Issac’s predicted NYC nuclear bombing are exposed. Afterward, Issac’s latest work of art depicts a mesmerizing future for a certain hero undergoing a crisis. Suresh decides to take the first few steps on the fresh path ahead of him. Matt and Audrey Hanson, an FBI agent, follow up a new lead in serial case of Sylar. Disgusted with Jessica’s most recent proceedings, Niki makes a rough call in order to keep her family safe.
